I've also blogged today about the history of the term Open Science (a first in what probably will end up as a short series): http://chem-bla-ics.blogspot.com/2019/04/history-of-term-open-science-1-early.html
new paper: "Beyond Pathway Analysis: Identification of Active Subnetworks in Rett Syndrome" https://chem-bla-ics.blogspot.com/2019/03/new-paper-beyond-pathway-analysis.html
ok, good, the CDK isotope data list is now online: https://egonw.github.io/cdkbook/appisotopes.html
a quick update on our #openscience feedback on #plan_S Show more
83 people now signed the feedback on Plan S (how scholarly publishing will look like 5 years from now) which is to be submitted tomorrow. We have about 30 hours left. If you care about Open Science, please have a look at: https://docs.google.com/document/d/14GycQnHwjIQBQrtt6pyN-ZnRlX1n8chAtV72f0dLauU/edit?usp=sharing
"Updated HMDB identifier scheme #2: #Wikidata updated" https://chem-bla-ics.blogspot.com/2019/01/updated-hmdb-identifier-scheme-2.html
Fwd: "Replacing BibTeX with Citation.js" https://chem-bla-ics.blogspot.com/2018/12/replacing-bibtex-with-citationjs.html
new blog post: "Creating nanopublications with Groovy" https://chem-bla-ics.blogspot.com/2018/12/creating-nanopublications-with-groovy.html
About my book... "Groovy Cheminformatics rises from the ashes" https://chem-bla-ics.blogspot.com/2018/12/groovy-cheminformatics-rises-from-ashes.html
I moved to Markdown but wanted to preserve live code and autogenerated reference sections.
fwd: New paper: "Introducing WikiPathways as a Data-Source to Support Adverse Outcome Pathways for Regulatory Risk Assessment of Chemicals and Nanomaterials" https://chem-bla-ics.blogspot.com/2018/12/new-paper-introducing-wikipathways-as.html
I asked last week about journals to have a look at, and after looking at them today, I picked the Annals, all the way leading up to EurJOC (with a touch of KNCV): https://tools.wmflabs.org/scholia/venues/Q28064607,Q28064608,Q28064609,Q27711837,Q662963,Q28064610,Q28064611,Q899286
we're approaching 250 supporters: https://www.change.org/p/asking-the-american-chemical-society-to-join-the-initiative-for-open-citations/u/23651836
65 people have already joined me and I just wrote up why citation networks are so important: https://www.change.org/p/asking-the-american-chemical-society-to-join-the-initiative-for-open-citations/u/23636386 #acs2ioc
Petition: "Join me in encouraging the ACS to join the Initiative for Open Citations" http://chem-bla-ics.blogspot.com/2018/11/join-me-in-encouraging-acs-to-join.html Or go directly here to sign: https://www.change.org/p/the-american-chemical-society-to-join-the-initiative-for-open-citations
a growing number of scholars are linked to affiliations in #wikidata and with the ORCID and #icanhazwikidata more and more articles are linked to universities... here we see the number of authors with a certain number of articles for Maastricht University: https://query.wikidata.org/embed.html#%23defaultView%3AScatterChart%0ASELECT%20%3FarticleCount%20(COUNT(%3Fresearcher)%20AS%20%3FresearcherCount)%20(GROUP_CONCAT(%3Forcid)%20AS%20%3Forcids)%20WITH%20%7B%0A%20%20SELECT%20%3Fresearcher%20%3Forcid%20(COUNT(%3Farticle)%20AS%20%3FarticleCount)%20WHERE%20%7B%0A%20%20%20%20%3Fresearcher%20wdt%3AP1416%2Fwdt%3AP361*%20wd%3AQ1137652%20%3B%0A%20%20%20%20%20%20%20%20%20%20%20%20%20%20%20%20wdt%3AP496%20%3Forcid%20.%0A%20%20%20%20OPTIONAL%20%7B%20%3Farticle%20wdt%3AP50%20%3Fresearcher%20.%20%7D%0A%20%20%7D%20GROUP%20BY%20%3Fresearcher%20%3Forcid%0A%20%20%20%20ORDER%20BY%20DESC(%3FarticleCount)%0A%7D%20AS%20%25DATA%20%7B%0A%20%20INCLUDE%20%25DATA%0A%7D%20GROUP%20BY%20%3FarticleCount%0A
so, you are wondering which organizations have the most authors with #ORCID identifiers associated? Well, #UniversityLeeds wins hands down... (source: #wikidata) https://query.wikidata.org/embed.html#%0ASELECT%0A%20%20%3Forganization%20%3ForganizationLabel%20(COUNT(%3Forcid_)%20AS%20%3FORCIDs)%0AWITH%20%7B%0A%20%20SELECT%20DISTINCT%20%3Forganization%20%3Fresearcher%20WHERE%20%7B%0A%20%20%20%20%3Fresearcher%20(%20wdt%3AP108%20%7C%20wdt%3AP463%20%7C%20wdt%3AP1416%20)%20%2F%20wdt%3AP361*%20%3Forganization%20.%20%0A%20%20%7D%20%0A%7D%20AS%20%25researchers%0AWHERE%20%7B%0A%20%20INCLUDE%20%25researchers%0A%20%20%3Fresearcher%20wdt%3AP496%20%3Forcid_%20.%0A%20%20SERVICE%20wikibase%3Alabel%20%7B%20bd%3AserviceParam%20wikibase%3Alanguage%20%22en%2Cda%2Cde%2Ces%2Cfr%2Cnl%2Cno%2Cru%2Csv%2Czh%22%20.%20%7D%20%0A%7D%0AGROUP%20BY%20%3Forganization%20%3ForganizationLabel%0AORDER%20BY%20DESC(%3FORCIDs)%0A%20
blog post: "Two presentations of last week: NanoTox 2018 and the BeNeLuX Metabolomics Days" http://chem-bla-ics.blogspot.com/2018/09/two-presentations-of-last-week-nanotox.html
blog post: "Data Curation: 5% inspiration, 95% frustration (cleaning up data inconsistencies)" http://chem-bla-ics.blogspot.com/2018/09/data-curation-5-inspiration-95.html
I have started populating my Publons profile again... I had closed it down, as it was leaking information that I did not want leaked... https://publons.com/author/1278281/egon-willighagen#profile
Chem/Bio/Stats/SemWeb, @the_cdk, @wikipathways, @jcheminf, @bigcat_um, @MaastrichtU (these tweets are personal)
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