okay, I finished our report. I hope I did not forget important work. Quite happy with the results; we did quite a bit of innovative work for the number of man months available, mostly because of #openscience which makes it so much simpler and far more efficient to collaborate between projects
Fwd: "BridgeDb NWO grant update #4: Bioregistry.io and a BioSB workshop" https://chem-bla-ics.blogspot.com/2022/07/bridgedb-nwo-grant-update-4.html #openscience #bridgedb #wikidata
today and tomorrow we will have the first NWO Open Science grant (*) hackathon meeting for the BridgeDb project. This one is aimed at updating the existing tools to create mapping databases. In January (likely) we have the second hackathon that will be open to a much wider audience #openscience
*) the grant proposal is published at: https://doi.org/10.3897/rio.8.e83031
new: "The LOTUS initiative for open knowledge management in natural products research" https://chem-bla-ics.blogspot.com/2022/05/new-lotus-initiative-for-open-knowledge.html https://doi.org/10.7554/elife.70780 #wikidata #openscience
"In this article, ..." (sarcasm)
May 2022 WikiPathways release: 197 edits by 21 contributors and 5 new pathways. Accessible via webservices and in RDF,/SPARQL PathVisio, cytoscape. https://www.wikipathways.org/index.php/Download_Pathways
#bioinformatics #openscience #opensource CW
Supported by AWSOpen.
Fwd: second update report for the NWO grant: https://chem-bla-ics.blogspot.com/2022/04/bridgedb-nwo-grant-update-2-building-up.html (including some words about the NWO ISAAC browser add-on to add articles with DOIs) #openscience
I started distributing Springer Nature articles in XML form via GitHub. Read my progress in my blog: 1. https://chem-bla-ics.blogspot.com/2021/08/in-which-i-use-my-api-account-to.html 2. https://chem-bla-ics.blogspot.com/2021/08/from-journal-of-cheminformatics.html #openscience #github #springernature #xml #jats
there are elections upcoming at Maastricht University... so, time to ask candidates some questions about #openscience https://chem-bla-ics.blogspot.com/2021/05/maastricht-university-elections.html
in the past week I have started annotating CAS registry numbers in #wikidata with references to indicate CAS Common Chemistry https://w.wiki/3AGr This, in turn, is starting to be used to validate the CAS numbers in the English Wikidata (I can reports for other langauges too, tho) #chemistry #openscience #AmericanChemicalSociety
Fwd: "21 Tips on how to sound #openscience" https://chem-bla-ics.blogspot.com/2020/12/21-tips-on-how-to-sound-openscience.html
I attended two meeting last week, both about #OpenScience: first the Beilstein Open Science symposium, followed by the Google Summer of Code Summit. Great meetings!
a quick update on our #openscience feedback on #plan_S
83 people now signed the feedback on Plan S (how scholarly publishing will look like 5 years from now) which is to be submitted tomorrow. We have about 30 hours left. If you care about Open Science, please have a look at: https://docs.google.com/document/d/14GycQnHwjIQBQrtt6pyN-ZnRlX1n8chAtV72f0dLauU/edit?usp=sharing
About my book... "Groovy Cheminformatics rises from the ashes" https://chem-bla-ics.blogspot.com/2018/12/groovy-cheminformatics-rises-from-ashes.html
I moved to Markdown but wanted to preserve live code and autogenerated reference sections.
I am looking for a PhD student interested in #openscience, ontologies, and nanomaterials and their interactions with living matter, to work on the NanoCommons project: https://www.academictransfer.com/en/50675/phd-candidate-for-the-nanocommons-project-fhmlnutrim-department-of-bioinformatics/
Chem/Bio/Stats/SemWeb, @the_cdk, @wikipathways, @bigcat_um, @MaastrichtU (these tweets are personal)
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