Maxime Garcia @gau@scholar.social
PhD in #Bioinformatics from #Marseille 🇫🇷, now in #Stockholm 🇸🇪, developing nf-core pipelines (mainly Sarek).
Joined Aug 2018
Pinned toot
Hi all!
I'm a bioinformatician.
I'm originally from the south of France, but now living in Stockholm.
I'm developing an open-source analysis pipeline to detect germline or somatic variants from whole genome sequencing.
I'm interested in cancer, large-scale data integration, automation, containerization, reproducibility and visualization.
More about me here:
http://maxulysse.github.io/
Maxime Garcia
boosted
Allez c'est décidé : on réessaye Mastodon (merci @XavCC pour la motivation) et on compte sur vous pour nous montrer que ça dépasse Twitter en terme de partages scientifiques !
On recommence avec notre article d'hier sur le #coronavirus 2019-nCoV et ce que la #bioinformatique apporte dans la lutte contre ce pathogène : https://bioinfo-fr.net/analyses-bioinformatiques-du-coronavirus-2019-ncov-pourquoi-et-comment
N'hésitez surtout pas à le partager !
Bonne lecture les poueteurs !
It is proven! I am maxulysse on Keybase: https://keybase.io/maxulysse/sigchain#e31a1f17994602813cb6d5b7682ef7d58541406f161f589443a974e8c717baf40f
Maxime Garcia
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D'après un script #Rstats, il y a plus de 8 millions de fois la #CGT dans le génome humain. #SyndiquezVous #bioinformatique #Biologie @G_Devailly
Maxime Garcia
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Does anyone have suggestions for accounts posting in French? I'm looking for reasons to read more French
Very happy to be part of this project: https://www.biorxiv.org/content/10.1101/610741v1
How to run Flask app by flask run or custom command without set FLASK_APP manually?
New Sarek Release 2.3, codename Äpar;
Improved usage for WES, Conda support, better QC, Multiple samples TSV file...
https://github.com/SciLifeLab/Sarek/releases/tag/2.3 #Sarek #Bioinformatics #Reproducibility #Sciworkflows #Nextflow
Maxime Garcia
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Maxime Garcia
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More Masto etiquette
Content Warnings may be new to many of you
Try to think of them as being similar to the Subject line of an email
They're not censorship; they're not a punishment; they're not something that need only be applied in cases where the content is very offensive
They're a piece of meta-data that it is polite to provide and that you're expected to supply in certain cases to help others to decide whether/when to engage with your post
Maxime Garcia
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Comme mon passe-temps est de clasher les homophobes sur Twitter, je me suis rendu compte qu'ils n'étaient pas du tout au courant de la loi française.
Alors j'ai rapidement bricolé ça.
C'est dans le domaine public, servez-vous.
( Version png, svg et pdf: https://sebsauvage.net/files/homophobie-delit.7z )
#Bioinformatics Hey! Dear Bioinformaticians and others Bioinfomagicians, I'm looking for anyone that could help me find someone who worked on #Illumina #iGenomes I'm trying to figure out scripts to redo that... It's an #SOStoTheWorld I hope that someone gets my #MessageInABottle
Maxime Garcia
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Maxime Garcia
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Mais c’est mignon ça aussi ! 😊
https://github.com/kamranahmedse/developer-roadmap
Maxime Garcia
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Les fêtes approchent !
Vous allez sûrement être mis à contribution pour dépanner un PC sous Windows 🤮
Voici une checklist de Timo pour être plus efficace:
https://lehollandaisvolant.net/?mode=links&id=20171230155611
Maxime Garcia
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Me, running desperately to the department of biology
"YOU COULD CALL YOUR GENETICALLY ENGINEERED APPLES—HACKINTOSHES"
A grad student removes her goggles, presses her fingers to her temples, and increments the large and ornate "people who have suggested the Hackintosh pun" sign by one
#bioinformatics Anyone else having an issue trying to run VEP inside a Singularity container?
Maxime Garcia
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Quand Twitter te trolle...
(bon en même temps, ils ont fait ce qu'ils ont dit)
Maxime Garcia
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I just realized how refreshing it is not to have all of my Mastodon clicks go through plus.url.google.com or t.co or flip.it or whatever. 🎉
Maxime Garcia
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Confession: I haven't written a bibliography by hand in about 5 years (thanks Zotero ❤️ )
PhD in #Bioinformatics from #Marseille 🇫🇷, now in #Stockholm 🇸🇪, developing nf-core pipelines (mainly Sarek).
Joined Aug 2018
