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Maxime Garcia

Hi all!
I'm a bioinformatician.

I'm originally from the south of France, but now living in Stockholm.

I'm developing an open-source analysis pipeline to detect germline or somatic variants from whole genome sequencing.

I'm interested in cancer, large-scale data integration, automation, containerization, reproducibility and visualization.

More about me here:
maxulysse.github.io/

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Maxime Garcia boosted
sebsauvage

:linux: #linux #usb #astuce

Astuce pour voir les débits en temps réel sur vos différents périphériques USB:

sudo apt install usbtop
sudo modprobe usbmon
sudo usbtop

(et vous serez choqué⋅e de découvrir que votre souris consomme 8 ko/seconde quand vous bougez le curseur)

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Maxime Garcia boosted
Geekus biologicus

Allez c'est décidé : on réessaye Mastodon (merci @XavCC pour la motivation) et on compte sur vous pour nous montrer que ça dépasse Twitter en terme de partages scientifiques !
On recommence avec notre article d'hier sur le #coronavirus 2019-nCoV et ce que la #bioinformatique apporte dans la lutte contre ce pathogène : bioinfo-fr.net/analyses-bioinf
N'hésitez surtout pas à le partager !
Bonne lecture les poueteurs !

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Maxime Garcia

It is proven! I am maxulysse on Keybase: keybase.io/maxulysse/sigchain#

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Maxime Garcia

Brexit Humor 

Caster obviously wants to avoid Brexit...

"I wish for my homeland's salvation.
With the omnipotent wish-granting device,
...I shall avert Britain's fate of destruction."

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Maxime Garcia boosted
Albin

Does anyone have suggestions for accounts posting in French? I'm looking for reasons to read more French

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Maxime Garcia

Very happy to be part of this project: biorxiv.org/content/10.1101/61

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Maxime Garcia

How to run Flask app by flask run or custom command without set FLASK_APP manually?

stackoverflow.com/questions/55

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Maxime Garcia

New Sarek Release 2.3, codename Äpar;
Improved usage for WES, Conda support, better QC, Multiple samples TSV file...
github.com/SciLifeLab/Sarek/re

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Maxime Garcia boosted
Procrastination as a Service

Bref, j'ai répondu au phishing.

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Maxime Garcia boosted
Administrative account

More Masto etiquette

Content Warnings may be new to many of you

Try to think of them as being similar to the Subject line of an email

They're not censorship; they're not a punishment; they're not something that need only be applied in cases where the content is very offensive

They're a piece of meta-data that it is polite to provide and that you're expected to supply in certain cases to help others to decide whether/when to engage with your post

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Maxime Garcia boosted
sebsauvage

#LGBT #luttes

Comme mon passe-temps est de clasher les homophobes sur Twitter, je me suis rendu compte qu'ils n'étaient pas du tout au courant de la loi française.

Alors j'ai rapidement bricolé ça.

C'est dans le domaine public, servez-vous.

( Version png, svg et pdf: sebsauvage.net/files/homophobi )

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Maxime Garcia

Hey! Dear Bioinformaticians and others Bioinfomagicians, I'm looking for anyone that could help me find someone who worked on I'm trying to figure out scripts to redo that... It's an I hope that someone gets my

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Maxime Garcia boosted
aeris 🏳️‍🌈

À lire 😊
jesuisundev.com/devenir-develo

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Maxime Garcia boosted
aeris 🏳️‍🌈

Mais c’est mignon ça aussi ! 😊
github.com/kamranahmedse/devel

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Maxime Garcia boosted
sebsauvage

Les fêtes approchent !
Vous allez sûrement être mis à contribution pour dépanner un PC sous Windows 🤮

Voici une checklist de Timo pour être plus efficace:

lehollandaisvolant.net/?mode=l

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Maxime Garcia boosted
The research fairy

Me, running desperately to the department of biology

"YOU COULD CALL YOUR GENETICALLY ENGINEERED APPLES—HACKINTOSHES"

A grad student removes her goggles, presses her fingers to her temples, and increments the large and ornate "people who have suggested the Hackintosh pun" sign by one

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Maxime Garcia

Anyone else having an issue trying to run VEP inside a Singularity container?

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Maxime Garcia boosted
sebsauvage

Quand Twitter te trolle...

(bon en même temps, ils ont fait ce qu'ils ont dit)

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Maxime Garcia boosted
Sean Leather

I just realized how refreshing it is not to have all of my Mastodon clicks go through plus.url.google.com or t.co or flip.it or whatever. 🎉

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Maxime Garcia boosted
Nicole Mirea

Confession: I haven't written a bibliography by hand in about 5 years (thanks Zotero ❤️ )

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