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Hi all!
I'm a bioinformatician.

I'm originally from the south of France, but now living in Stockholm.

I'm developing an open-source analysis pipeline to detect germline or somatic variants from whole genome sequencing.

I'm interested in cancer, large-scale data integration, automation, containerization, reproducibility and visualization.

More about me here:
maxulysse.github.io/

More Masto etiquette

Content Warnings may be new to many of you

Try to think of them as being similar to the Subject line of an email

They're not censorship; they're not a punishment; they're not something that need only be applied in cases where the content is very offensive

They're a piece of meta-data that it is polite to provide and that you're expected to supply in certain cases to help others to decide whether/when to engage with your post

#LGBT #luttes

Comme mon passe-temps est de clasher les homophobes sur Twitter, je me suis rendu compte qu'ils n'étaient pas du tout au courant de la loi française.

Alors j'ai rapidement bricolé ça.

C'est dans le domaine public, servez-vous.

( Version png, svg et pdf: sebsauvage.net/files/homophobi )

Hey! Dear Bioinformaticians and others Bioinfomagicians, I'm looking for anyone that could help me find someone who worked on I'm trying to figure out scripts to redo that... It's an I hope that someone gets my

Coucou les meufs de mastodon en région parisienne ! @alice et moi on propose de coacher 4 meufs pour apprendre python et la sécurité informatique (on alternerait l'un et l'autre pour que ça décante) ! Les modalités sont à définir avec les participantes (dates/lieux/qui fait quel gâteau).
Boost immensément appréciés !

Les fêtes approchent !
Vous allez sûrement être mis à contribution pour dépanner un PC sous Windows 🤮

Voici une checklist de Timo pour être plus efficace:

lehollandaisvolant.net/?mode=l

Me, running desperately to the department of biology

"YOU COULD CALL YOUR GENETICALLY ENGINEERED APPLES—HACKINTOSHES"

A grad student removes her goggles, presses her fingers to her temples, and increments the large and ornate "people who have suggested the Hackintosh pun" sign by one

Anyone else having an issue trying to run VEP inside a Singularity container?

Quand Twitter te trolle...

(bon en même temps, ils ont fait ce qu'ils ont dit)

I just realized how refreshing it is not to have all of my Mastodon clicks go through plus.url.google.com or t.co or flip.it or whatever. 🎉

Confession: I haven't written a bibliography by hand in about 5 years (thanks Zotero ❤️ )

Idea for a Star Trek episode Show more

Vous voyez Alpine ? Sisi, le truc utilisé partout pour toutes les images Docker du monde ou presque.
Ben… Voilà 😂
justi.cz/security/2018/09/13/a

If I see you in my follower list I'll be less inclined to reject your paper. That's just how objective a grumpy reviewer I am.

On Sep 28 13:00 CET, I will defend my PhD thesis, titled "Reproducible Data Analysis in Drug Discovery with Scientific Workflows and the Semantic Web" in room B22 at BMC in Uppsala. Welcome! Full texts for the comprehensive summary & papers are available. bionics.it/posts/my-thesis

Hey ! Ça y est, le site est officiellement OUVERT !
La mise en production a été un peu chaotique, mais je suis super content que le site soit maintenant public :D
N'hésitez surtout pas à me remonter tout bug que vous rencontreriez sur Github : github.com/Deuchnord/mercredif !

"Paywall: The Business of Scholarship" can now be downloaded from vimeo.com/273358286

Hi @fractalbot I heard you were making fractals. Can I get one as well?

Show more
Scholar Social

Federated microblogging for academics

Scholar Social is a microblogging platform for researchers, grad students, librarians, archivists, undergrads, academically inclined high schoolers, educators of all levels, journal editors, research assistants, professors, administrators—anyone involved in academia who is willing to engage with others respectfully.

We strive to be a safe space for queer people and other minorities, recognizing that there can only be academic freedom where the existence and validity of interlocutors' identities is taken as axiomatic.

"An academic microblog that you can be proud to put on the last slide of a presentation at a conference"

"Official" monthly journal club!

(Participation is, of course, optional)

Scholar Social features a monthly "official" journal club, in which we try to read and comment on a paper of interest.

Any user of Scholar Social can suggest an article by sending the DOI by direct message to @socrates@scholar.social and one will be chosen by random lottery on the last day of the month. We ask that you only submit articles that are from *outside* your own field of study to try to ensure that the papers we read are accessible and interesting to non-experts.

Read more ...